Uh ya, you do not see what is going on.
http://www.muslim.org/islam/tolerance.htm
http://www.imamreza.net/eng/imamreza.php?id=3282
http://www.islamreligion.com/articles/208/
You say "that rape and genocide stuff is Old Testament, I can disregard it".
Muslims say "There are many other examples during the lifetime of the Prophet, may the mercy and blessings of God be upon him, in addition to the Saheefah that practically portray the tolerance Islam shows for other religions."