1. I would not not have Allen in the shotgun, ever, this season. He more equally effective under center, and since this is a learning year, it is better for development.
2. I would try to get the offense to the line of scrimmage much faster. Allen would benefit from getting feedback from the OC to help learn picking up some of the blitzes (assuming the OC actually understands the defense
3. I would do away with empty backfields on all downs. Its not necessary, and we don't have any good receivers, so there is no point in not having McCoy or Ivory on the field for every offensive play.
4. Which ever tight end is best at blocking should be on the field 70% of the downs, none of them are effective receivers.
5. I would try to coach Allen into not doing the spin to the blindside move.